Cytoscape - HySE
Add Node
File
unix-family-tree
Load...
Save
HySE Options
Perform Post Processing
Use Grid Variant
Display Initial Positions
Randomize Initial Positions
Uniform Node Dimensions
Highlight Swapped Node Pair
Rank Gap
Repulsion Force
Ideal Edge Length
Swap Force Limit
Swap Period
Min Pair Swap Period
Animation Tick Delay
Ticks Per Frame
HySE
HySE Animated
Graph Operations
Add To Heirarchy
Add To Heirarchy Prob
Add Nodes To Heirarchy Randomly
Delete Selected
Remove Node Labels
Max Random Width/Height
Randomize Width and Height
CoSE/Dagre Layout
CoSE
CoSE Animated
Dagre
Experiments
Run Experiment
Directed : Undirected (Ratio)
Depth
Directed - Undirected edge prob
Undirected - Undirected edge prob
Create Test Graph
Dagre Options
nodeSep
edgeSep
rankSep
rankDir
TB
LR
align
UL
UR
DL
DR
acyclicer
DFS
greedy
ranker
network-simplex
tight-tree
longest-path
animate
animationDuration
animationEasing
zoom
fit
padding
spacingFactor
nodeDimensionsIncludeLabels
HiSE Options
ticksPerFrame
coolingCoefficient
isFastCooling
uniformNodeDimensions
isManuelRankAndOrder
tickDelay (ms)
fullyCalcRep4Ticks
nodeRepulsionCalculationWidth
edgeElasticity
nodeRepulsion
orderFlipPeriod
orderGap
rankGap
maxNodeDisplacement
expansionCoefficient
Layvo
Dagre
Dagre w/ FD ordering & positioning
Dagre w/ FD ordering
FD w/ specified layers
FD w/ specified layers animated
Random Position
Hierarchial Position
Manuel Rank & Order
Dagre VS FD
Dagre VS FD on small graphs
Dagre VS FD on 10-50 graphs
Extremely dense graphs
Dagre VS FD with tuning
10-50 graphs
Small Graphs
Big Graphs
coolingCoefficient
fullyCalcRep4Ticks
nodeRepulsionCalculationWidth
idealEdgeLength
edgeElasticity
nodeRepulsion
swapForceLimit
swapPeriod
minPairSwapPeriod
orderFlipPeriod
maxNodeDisplacement